Waiter, There is Something in My Primordial Soup: Tracing the Origins of Life

The essential message of life has been copied and recopied for more than three billion years, but where did that message come from?

Neil deGrasse Tyson, Cosmos: A Spacetime Odyssey.

Research and discussions about origins, whether about the universe, life, or our own ancestry, have a sense of convergence to them. They help narrow down the infinite number of potential explanations to a select few or maybe even one. Along the way, however, assumptions are made, any of which could lead to a different conclusion.

Geologists estimate the Earth formed around 4.54 billion years ago. Yet, the origin of when and how life came to be on this planet is still unknown. Indeed, the earliest evidence of terrestrial life comes from fossils, known as stromatolites. These fossils are layers of single-celled microbes, known as cyanobacteria, discovered in Western Australia dating back to about 3.53 billion years. Since these bacteria were already complex organisms, the actual origin of life occurred much earlier. This is a “limit of horizon” problem and makes the scientific study of origins prior to single-cell microbes quite difficult (see Overcoming the Limits of Science). It also makes the natural chemical origin of life highly improbable.

As we explore the universe, its galaxies, stars, and exoplanets, we assume, given our limited understanding, that life requires unique circumstances to arise. One basic assumption is that the propitious location has to be within the habitable zone of a star. This means a location with a source of light, energy, liquid water, and biogenic elements such as carbon and other elements at the right temperature. The Earth certainly met those criteria.

From a basic thermodynamics perspective, life requires a constant source of power. Interestingly, life on Earth developed a single source of metabolic drive—that associated with transferring electrons by chemical reactions. Although living things can detect and generate other potential sources including magnetic, kinetic, gravitational, thermal gradient, and electrostatic, life used none of these for metabolic energy.

Second, carbon molecules gained the dominant role as the backbone of biochemistry for life. This is true not only on earth but, according to astrophysicists, the entire Solar System. Carbon is not only abundant, but the variety of chemical bonds it can form make it the basis of complex chains of different molecules. It is the LEGO brick of the chemical world. While carbon is necessary, it is not sufficient for life. An entire array of additional elements is needed for that, including water (H2O), nitrogen, sulfur, phosphorous, calcium, and potassium. There is no definitive list since it would depend on the organism considered (e.g., methanogens require high levels of nickel).

Third, any life based on molecules requires some kind of solvent to move around. Liquid is more ideal than gas or solid since water has unique physical and chemical properties making it well suited to support the complex chemistry required for life. For instance, water is the second most common molecule in the universe after hydrogen. Its ability to expand when it freezes keeps bodies of water from freezing into a solid. It can dissolve many substances easily and has a high heat capacity, which means it takes a lot of energy to change temperature. This is one major reason for the relatively moderate Earth climate.

Once these fundamental parts were in place, the next stage in the chemical origin of life likely involved the creation of complex molecules for a variety of functions. The most basic function being to convert energies into “food” and to organize, code, and sustain life. A variety of experiments have argued that life arose gradually from inorganic molecules, with “building blocks” called monomers, like amino acids and nucleotides, forming first. Monomers combined to polymerize or make more complex molecules called polymers, like proteins and nucleic acids. The last step required the creation of self-sustaining DNA and RNA polymers. This stepwise, spontaneous formation of simple, then more complex, then self-sustaining biological molecules—is still at the core of most origins-of-life hypotheses today.

Important questions remain. For instance, in living cells, enzymes put together polymers. Yet, enzymes are themselves polymers, so which came first is a kind of chicken-and-egg problem! One postulated solution is that monomers may have “spontaneously” formed polymers through some sort of catalytic accident. Experiments in the 1990s showed that RNA nucleotides link when exposed to clay, which acts as a template and catalyst to form an RNA polymer. However, another major roadblock is that polymerization is difficult in a watery environment. In fact, it requires the removal of water or dehydration. But, an even more troublesome issue is how polymers became functional and self-replicating. One possibility for replication is template-assisted ligation. However, one must also account for the ordering of amino acids in proteins and nucleotide bases in the RNA and DNA allowing them to function as sources of “information.” This ordering is what proponents of intelligent design call the “information sequence problem.” 

Besides organizing, coding, and sustaining life, another major aim of these early complex molecules was to convert light into a food source or metabolic energy. Nature solved this problem with the appearance of light-activated enzymes. Light activated proteins are common, but light-activated enzymes are rare, with only three known, making this development one of the more tenuous points in the history of life’s origin. Protochlorophyllide oxidoreductase or ‘POR’, is the enzyme responsible for making the pigment vital for chlorophyll in plants. Without chlorophyll, there is no photosynthesis; without photosynthesis there is no plant life; and without plant life there is no us. Photosynthesis is the process that uses light energy to produce sugars from water and carbon dioxide, while emitting oxygen, which became so vital to human life.

Chlorophyll’s basic structure is a porphyrin ring with a magnesium atom at its center. This structure is, perhaps not unexpectedly, very similar to that of the heme molecule, which is found in the hemoglobin in our red blood cells, with an iron atom at its center, and which carries oxygen to every part of our bodies. Because of its structure, chlorophyll absorbs light in the blue and red parts of the visible spectrum, and reflects the green light back to our eyes. It is why plants appear green.

Hence, as we peer back in time to understand where we came from, our analyses lenses blur as events become indistinguishable, making scientific explanations of life origins extremely difficult. Even the distinguished materialist scientist, Francis Crick, who along with James Watson identified the structure of the DNA, said, “The origin of life appears to be almost a miracle, so many are the conditions which would have had to be satisfied to get it going.”

Perhaps because of such difficulties, another idea called “panspermia” has gained credibility. Organisms from one world get a ride to another to spread the organic seeds of life. Launched into space aboard discharged bits of planetary debris, these building blocks of life could, upon arrival at another planet, survive and thrive—perhaps evolving into the diversity of life we see on Earth. Recent analyses of Martian meteorites show several organic compounds including key building blocks of life, i.e., amino acids, nucleobases, and phosphate. 

Or, then again, maybe life is a miracle!

The Benefits of Meditation: Rediscovering the Real You

We all have ideas about what meditation is. It means many things to different people—a tool, a religious path, a lifestyle. At its root, there is a sense of gathering, of bringing together and focusing the resources of attention on the present moment. Meditation practice brings this awareness to a narrow or broad focus, along with a certain gentleness and care, to reduce our reactivity to life events. As we become proficient in the skill, the spotlight of attention falls on either simple or complex targets. A major focus is our own mind and its helter-skelter motifs, replete with uncertainty, randomness, and emotional pain. At some point, we attend to that which holds all objects of attention—awareness itself.

We practice these skills to relax, for health reasons, or to explore spiritual matters. How we meditate varies, either sitting, lying down, walking, chanting, dancing, or carrying on with our life. Each mode and approach offer valuable experiences and important insights. Mindfulness, qi jong, yoga, mantras, TM, prayer, progressive relaxation, Dzogchen, Zen, Sufi dancing are all part of what one imagines when the word is mentioned. Because there are so many styles and variations, the practice of meditation, and what might be its outcome, seems complex, confusing, and unnecessarily complicated.

As a psychological and health improvement practice, the consistent routine of meditation reduces stress, anxiety, memory loss, negative emotions, and pain, while improving heart rate, concentration, sleep, emotional health, patience, tolerance, imagination and creativity. These positive outcomes fuel the growing interest. As it assumes a spiritual orientation and lifestyle, meditation becomes especially intricate. An aspiration in this approach is to reconcile with an initial unity we experienced as children. Limitless paths exist to such unity, involving concepts of God, Buddha-nature, the Source, enlightenment, kensho, satori, wakefulness, realization, etc. and innumerable methods and techniques to help us get there. Just like the act of driving remains the same regardless of the vehicle you use, despite the hundreds of variations, styles, and gadgets associated with driving, meditation from a spiritual perspective remains straightforward. At its most basic, it concerns mental and spiritual health, and the rediscovery of the real you.

I would argue there are only three absolutely necessary actions needed to practice meditation, everything else is optional.

  1. Be present-moment centered and focused on: “Who is present?”
  2. Stop identifying with mind and body
  3. Trust and surrender to the non-conceptual awareness that arises.

Regardless of your particular method and technique, consistently practicing meditation as an act of love towards yourself and others, whether as a secular or spiritual intention, will help you develop and fine-tune the following unique traits:

Stillness: More than the absence of movement, stillness is an attitude that “life is perfect as it is” or more prosaically that “life is what it is.” It is the reality which is in front of us — a single outcome out of a set of infinite possibilities given the history and circumstances of each moment — and which we accept and have no need to change.

No-mind: This comes from a Buddhist martial arts term, Mushin, that translates literally as no-mind. It refers to a mind that is not fixed or occupied by thought or emotion and open to everything. An unencumbered mind that lacks self-centeredness and flows unimpeded from moment to moment. Also associated with the term “beginner’s mind” and “compassionate mind.”

Flow: Overlaps with the idea of “no-mind.” It is the sense of being completely immersed and absorbed in an activity or task, in which we lose a sense of space and time. The psychologist Mihály Csikszentmihályi described it as when “The ego falls away. Time flies. Every action, movement, and thought follows inevitably from the previous one, like playing jazz. Your whole being is involved, and you’re using your skills to the utmost.”

Clarity: A comprehensive way of viewing life, with a clearness of perception, thinking, and intentionality. This is seeing ourselves, the context of our life, our goals and intentions holistically. It is opening our mind to the Infinite and recognizing that like a wave on the ocean we express that ultimate Reality.

Situational Awareness: Right Mindfulness (from Buddha’s Eightfold Path). It means being aware of our thoughts, actions, and intentions in that moment with a gentle and caring attitude. Or as David Brooks has described it: a feel for the unique contours of the situation. An intuitive awareness of when to follow and when to break the rules. A feel for the flow of events, a special sensitivity, not necessarily conscious, for how fast to move and what decisions to take that will prevent a bad outcome. A sensitivity that flows from experience, historical knowledge, humility in the face of uncertainty, and having led a reflective and interesting life.

Joy: More than an emotion of delight, joy is a state of being and cherishing of the moment, feeling fulfilled, lacking nothing, and being content. A feeling that pervades your entire body, mind, and spirit.

Empathy, love, and compassion: This is our sense of responsibility for others. We feel what they feel and are moved to help relieve their suffering. These are the motivators and bonds that form a true intimacy with others.

Trust and lack of fear: As fears subside, the reality of something greater than ourselves increases and trust in its benevolence grows. It is a non-conceptual awareness that carries a sense of vitality, intelligence, and love.

Openness, curiosity and creativity: As fears subside, the innate nature of our original mind comes to the foreground: An inner and outer boundless field of awareness that is open, active, adaptable, dynamic, inquisitive, and creative.

Wisdom: The wisdom of our open and creative mind is available to respond intuitively, spontaneously, and appropriately in any circumstance that we encounter, without the need to conceptualize and rationalize. It transcends intellectual/conceptual knowing.